var version = 188;
var baseLocation = "http://dynamoidapps.com/HighFidelity/Cosm/";
var cellLayout;



assignVariables();

var locations = {
	cellLayout:[{x:3000,y:13500,z:3000},{x:3276.6, y:13703.3, z:4405.6}, 1800],
	cells:[{x:13500,y:13500,z:13500},{x:13501,y:13501,z:13501}, 400],
	ribosome:[{x:13500, y:3000, z:3000},{x:13501, y:3001, z:3001}, 1000],
	hexokinase:[{x:3000, y:3000, z:13500},{x:3001, y:3500, z:13500}, 1000],
	mitochondria:[{x:3000, y:13500, z:3000},{x:3240, y:13519, z:3874}, 1000],
	translation:[{x:3000, y:13500, z:3000},{x:2962, y:13492, z:3342}, 1000]
};


var scenes = [
	
	{
		name:"Cells",
		objects:"",
		location: locations.cells[0],
		entryPoint: locations.cells[1],
		zone:
		{
			dimensions:{x:4000,y:4000,z:4000},
			light:{r:255,g:200, b:200},
			intensity:1.1,
			ambient: 0.7,
			sun:true,
			skybox: "cells_skybox_cross"
		},
		instances:[{
			model:"Cell",
			dimensions:{x:400,y:450,z:400},
			offset:{x:0,y:0,z:0},
			radius:500,
			number:10,
			script: "moveRandomly",
			visible:true
		}],
		boundary: {
			radius: locations.cells[2],
			center: locations.cells[0],
			location: locations.cellLayout[1],
			target: locations.cellLayout[0]
		}
	},
	{
		name: "CellLayout",
		objects: cellLayout,
		location: locations.cellLayout[0],
		entryPoint: locations.cellLayout[1],
		zone:
		{
			dimensions:{x:4000,y:4000,z:4000},
			light:{r:247,g:233,b:220},
			intensity:2.3,
			ambient: 0.7,
			sun:true,
			skybox: "cosmos_skybox_blurred"
		},
		instances:[
			{
				model:"translation",
				dimensions:{x:10,y:16,z:10},
				offset:{x:0,y:0,z:0},
				radius:300,
				number:15,
				userData: JSON.stringify({
				   target:locations.ribosome[1],
				   location:locations.ribosome[0],
					baseURL:baseLocation
				   }),
				script:"zoom",
				visible:true
			},
			{
				model:"vesicle",
				dimensions:{x:60,y:60,z:60},
				randomSize: 10,
				offset:{x:0,y:0,z:0},
				radius:1000,
				number:45,
				userData:"",
				script:"moveRandomly",
				visible:true
			},
			{//golgi vesicles
				model:"vesicle",
				dimensions:{x:10,y:10,z:10},
				randomSize: 10,
				offset:{x:-319,y:66,z:976},
				radius:140,
				number:20,
				userData:"",
				script:"",
				visible:true
			},
			{//golgi vesicles
				model:"vesicle",
				dimensions:{x:15,y:15,z:15},
				randomSize: 10,
				offset:{x:-319,y:66,z:976},
				radius:115,
				number:15,
				userData:"",
				script:"moveRandomly",
				visible:true
			},
			{
				model:"vesicle",
				dimensions:{x:50,y:50,z:50},
				randomSize: 10,
				offset:{x:0,y:0,z:0},
				radius:600,
				number:30,
				userData:"",
				script:"",
				visible:true
			},
			{//outer vesicles
				model:"vesicle",
				dimensions:{x:60,y:60,z:60},
				randomSize: 10,
				offset:{x:0,y:0,z:0},
				radius:1600,
				number:45,
				userData:"",
				script:"",
				visible:true
			},
			{//outer vesicles
				model:"vesicle",
				dimensions:{x:40,y:40,z:40},
				randomSize: 10,
				offset:{x:0,y:0,z:0},
				radius:1400,
				number:45,
				userData:"",
				script:"moveRandomly",
				visible:true
			},
			{//outer vesicles
				model:"vesicle",
				dimensions:{x:80,y:80,z:80},
				randomSize: 10,
				offset:{x:0,y:0,z:0},
				radius:1800,
				number:45,
				userData:"",
				script:"moveRandomly",
				visible:true
			},
//			{//wigglies
//				model:"wiggly",
//				dimensions:{x:320,y:40,z:160},
//				randomSize: 10,
//				offset:{x:0,y:0,z:0},
//				radius:1800,
//				number:50,
//				userData:"",
//				script:"moveRandomly",
//				visible:true
//			},
////			{//wigglies
//				model:"wiggly",
//				dimensions:{x:640,y:80,z:320},
//				randomSize: 10,
//				offset:{x:0,y:0,z:0},
//				radius:2100,
//				number:50,
//				userData:"",
//				script:"moveRandomly",
//				visible:true
//			},
			{
				model:"hexokinase",
				dimensions:{x:3,y:4,z:3},
				randomSize: 10,
				offset:{x:236,y:8,z:771},
				radius:80,
				number:15,
				userData: JSON.stringify({
				   target:locations.hexokinase[1],
				   location:locations.hexokinase[0],
					baseURL:baseLocation
				   }),
				script:"zoom",
				visible:true
			},
			{
				model:"pfructo_kinase",
				dimensions:{x:3,y:4,z:3},
				randomSize: 10,
				offset:{x:236,y:8,z:771},
				radius:60,
				number:15,
				userData: "",
				script:"",
				visible:true
			},
			{
				model:"glucose_isomerase",
				dimensions:{x:3,y:4,z:3},
				randomSize: 10,
				offset:{x:236,y:8,z:771},
				radius:70,
				number:15,
				userData: "",
				script:"",
				visible:true
			}
//			{
//				model:"NPC",
//				dimensions:{x:20,y:20,z:20},
//				randomSize: 10,
//				offset:{x:208.593693,y:6.113100222,z:153.3202277},
//				radius:520,
//				number:25,
//				userData: "",
//				script:"",
//				visible:true
//			}


		],
		boundary: {
			radius: locations.cellLayout[2],
			center: locations.cellLayout[0],
			location: locations.cells[1],
			target: locations.cells[0]
		}
	},
	{
		name:"Ribosome",
		objects:"",
		location: locations.ribosome[0],
		entryPoint: locations.ribosome[1],
		zone:
		{
			dimensions:{x:4000,y:4000,z:4000},
			light:{r:255,g:255,b:255},
			intensity:0.6,
			ambient: 0.4,
			sun:true,
			skybox: "ribosome_skybox"
		},
		instances:[
			{
				model:"translation_highres",
				dimensions:{x:3000,y:3000,z:1200},
				offset:{x:0,y:0,z:0},
				radius:0,
				number:1,
				userData:"",
				script: "",
				visible:true
			}
		],
		boundary: {
			radius: locations.ribosome[2],
			center: locations.ribosome[0],
			location: locations.translation[1],
			target: locations.translation[0]
		}
	},
	{
		name:"Hexokinase",
		objects:"",
		location: locations.hexokinase[0],
		entryPoint: locations.hexokinase[1],
		zone:
		{
			dimensions:{x:6000,y:6000,z:6000},
			light:{r:255,g:255,b:255},
			intensity:0.6,
			ambient: 0.4,
			sun:true,
			skybox: "hexokinase_skybox"
		},
		instances:[
			{
				model:"hexokinase_highres",
				dimensions:{x:1200,y:1200,z:1200},
				offset:{x:0,y:0,z:0},
				radius:0,
				number:1,
				userData:"",
				script: "moveRandomly",
				visible:true
			}
		],
		boundary: {
			radius: locations.hexokinase[2],
			center: locations.hexokinase[0],
			location: locations.mitochondria[1],
			target: locations.mitochondria[0]
		}
	}
];


function ImportScene(scene) {


	var sceneDataLines = scene.objects.split(";");
	for (var i = 1; i < sceneDataLines.length; i++) {
		var data = sceneDataLines[i].split(",");
		var posX = Number(data[1]) + scene.location.x;
		var posY = Number(data[2]) + scene.location.y;
		var posZ = Number(data[3]) + scene.location.z;
		var url = baseLocation + scene.name + "/" + data[0] + ".fbx?" + version;
		var position = {x:posX, y:posY, z:posZ};
		var dimensions = {x:data[4], y:data[5], z:data[6]};
		var rotation = Quat.fromPitchYawRollDegrees(data[7],data[8],data[9]);
		var name = data[0].replace(/[0-9]/g, '');

		var labelDistance = (Number(data[4]) + Number(data[5]) + Number(data[6]))/3 + 50;
		var idDimensions = {x:Number(dimensions.x)+200, y:Number(dimensions.y)+200, z:Number(dimensions.z)+200};
		
		
		
		//print ("Label distance is " + labelDistance + " for " + name);
		if (name != "" && name != "NPC" && name != "undefined" && name != "microtubule")
			CreateIdentification(name, position, {x:0, y:0, z:0}, idDimensions, labelDistance);

		CreateEntity(data[0], position, rotation, dimensions, url, "", "", true);

	}



	if (scene.name == "CellLayout") {
		MakeMTEnds();
        MakeMTLabels();
	}
	//create zone and instances

	CreateZone(scene);
	CreateInstances(scene);
	CreateBoundary(scene);
	
	CreateBackgroundAudio(scene.name, scene.location, scene.dimensions);

	print("done " + scene.name);

}

function CreateNavigationButton(scene, number){
	
		Entities.addEntity({
			type: "Sphere",
			name: scene.name + " navigation button",
			color: { red: 200, green: 0, blue: 0 },
			dimensions: {x:10,y:10,z:10},
			visible: false,
			userData: JSON.stringify({
				name:scene.name,
				entryPoint: scene.entryPoint,
				target: scene.location,
				offset: number,
				baseURL: baseLocation
			}),
			script: baseLocation + "Scripts/navigationButton.js?" + version,
			ignoreForCollisions:true
		});
}

function CreateBoundary (scene)
{
	var pts = getEvenlyDistributedPointsOnSphere(80);

	for (var i = 0; i < pts.length; i++) {

		var boundPos = {
			x: scene.boundary.center.x + scene.boundary.radius * pts[i].x,
			y: scene.boundary.center.y + scene.boundary.radius * pts[i].y,
			z: scene.boundary.center.z + scene.boundary.radius * pts[i].z
		};
		var script = "zoom.js?" + version;
		var dimensions = {x: 0.6 * scene.boundary.radius, y: 0.6 * scene.boundary.radius, z: 100};
		var boundRot = getLookRotation(boundPos, scene.boundary.center);
		var data = JSON.stringify({
			target:scene.boundary.target,
			location:scene.boundary.location,
			baseURL: baseLocation
		});
		
		Entities.addEntity({
			type: "Sphere",
			name: "boundary",
			color: { red: 200, green: 0, blue: 0 },
			position: boundPos,
			rotation: boundRot,
			dimensions: dimensions,
			visible: false,
			userData: data,
			script: baseLocation + "Scripts/" + script,
			ignoreForCollisions:true
		});
	}

}

function getLookRotation (loc, targetPos) {

	var direction = Vec3.normalize(Vec3.subtract(loc, targetPos));

	var pitch = Quat.angleAxis(Math.asin(-direction.y) * 180.0 / Math.PI, {x:1, y:0, z:0});
	var yaw = Quat.angleAxis(Math.atan2(direction.x, direction.z) * 180.0 / Math.PI, {x:0, y:1, z:0});

	return Quat.multiply(yaw, pitch);
}


function getEvenlyDistributedPointsOnSphere (numPoints)
{

	var points = [];

	var inc = Math.PI * (3 - Math.sqrt(5));
	var off = 2 / numPoints;

	for (var i = 0; i < numPoints; i++)
	{
		var y = i * off - 1 + (off / 2);
		var r = Math.sqrt(1 - y * y);
		var phi = i * inc;

		points[i] = {x: Math.cos(phi) * r, y: y, z: Math.sin(phi) * r};
	}

	return points;
}

function deleteAllInRadius (position, radius)
{
	var n = 0;
	var arrayFound = Entities.findEntities(position, radius);
	for (var i = 0; i < arrayFound.length; i++) {

		Entities.deleteEntity(arrayFound[i]);
		Entities.deletingEntity(arrayFound[i]);
	}
//	print("deleted " + arrayFound.length + " entities");
}

function CreateInstances(scene){
	for (var i=0; i < scene.instances.length; i++){

		for (var j=0; j<scene.instances[i].number; j++){
			var point = getPointOnSphereOfRadius(scene.instances[i].radius);
			//print (scene.name + " point is " + point.x + " " + point.y + " " + point.z);
			var posX = scene.location.x + point.x + scene.instances[i].offset.x;
			var posY = scene.location.y + point.y + scene.instances[i].offset.y;
			var posZ = scene.location.z + point.z + scene.instances[i].offset.z;
			var position = {x:posX, y:posY, z:posZ};
			var url = baseLocation + "Instances/" + scene.instances[i].model + ".fbx?" + version;
			var script = scene.instances[i].script + ".js?" + version;
			var rotX = 360 * Math.random() - 180;
			var rotY = 360 * Math.random() - 180;
			var rotZ = 360 * Math.random() - 180;
			var rotation = Quat.fromPitchYawRollDegrees(rotX,rotY,rotZ);
			var dimensions;
			if (scene.instances[i].script == ""){
				script = "";
			}
			//is there a smarter way to randomize size?
//			if (scene.instances[i].randomSize){
//				dimensions = {x:scene.instances[i].dimensions.x }
//			}
			if (scene.instances[i].model == "vesicle"){
				var idBounds = {x:scene.instances[i].dimensions.x + 100, y:scene.instances[i].dimensions.y + 100, z:scene.instances[i].dimensions.z + 100};
				CreateIdentification(scene.instances[i].model, position, {x:0, y:0, z:0}, idBounds, 150);

			}

//

			CreateEntity(scene.instances[i].model, position, rotation, scene.instances[i].dimensions, url, script, scene.instances[i].userData, scene.instances[i].visible);
		}
	}
}



function CreateIdentification(name, position, rotation, dimensions, showDistance){
	//print ("creating ID for " + name);
	Entities.addEntity({
		type: "Sphere",
		name: "ID for " + name,
		color: { red: 200, green: 0, blue: 0 },
		dimensions: dimensions,
		position: position,
        rotation: rotation,
		visible: false,
		userData: JSON.stringify({
				   showDistance:showDistance,
				   name:name,
					baseURL:baseLocation
				   }),
		script: baseLocation + "Scripts/showIdentification.js?" + version,
		ignoreForCollisions:true
	});

}
function CreateBackgroundAudio(name, position){
//	print ("creating ID for " + name);
	Entities.addEntity({
		type: "Sphere",
		name: "Location " + name + " background audio",
		dimensions: {x:4000,y:4000,z:4000},
		position: position,
		visible: false,
		userData: JSON.stringify({
				   name:name,
					baseURL:baseLocation
				   }),
		script: baseLocation + "Scripts/playBackgroundAudio.js?" + version,
		ignoreForCollisions:true
	});

}

function getPointOnSphereOfRadius(radius) {

	var phi = 2 * Math.PI * Math.random();
	var theta = Math.PI * Math.random();
	return {
		x: radius * Math.sin(theta) * Math.cos(phi),
		y: radius * Math.sin(theta) * Math.sin(phi),
		z: radius * Math.cos(theta)
	};
}

function CreateEntity (name, position, rotation, dimensions, url, script, userData, visible) {
	var scriptLocation;
	if (script == "") {
		scriptLocation = "";
	}
	else{
		scriptLocation = baseLocation + "Scripts/" + script;
	}

		Entities.addEntity({
			type: "Model",
			name: name,
			position: position,
			rotation: rotation,
			dimensions: dimensions,
			modelURL: url,
			visible: visible,
			animationURL: url,
			animationIsPlaying: true,
			animationFrame:Math.random()*1000,
			angularDamping:0,
			linearDamping:0,
			animationSettings: JSON.stringify({
				firstFrame:0,
				lastFrame:1000,
				fps:30,
				frameIndex:Math.random()*1000,
				hold:false,
				loop:true,
				running:true,
				startAutomatically:true
			}),
			userData: userData,
			script: scriptLocation,
			ignoreForCollisions:true,
			shapeType:"compound",
			compoundShapeURL:url
		});

//	print("added " + name + " at (" + position.x + ", " + position.y + ", " + position.z + ")");

}

function CreateZone(scene){
//	print ("Creating " + scene.name + " zone.........................");
	Entities.addEntity({
		type: "Zone",
		name: scene.name + " Zone",
		position: { x:scene.location.x, y:scene.location.y, z:scene.location.z },
		dimensions: { x: scene.zone.dimensions.x, y: scene.zone.dimensions.y, z: scene.zone.dimensions.z },
		keyLightColor: { red: scene.zone.light.r, green: scene.zone.light.g, blue: scene.zone.light.b },
		keyLightDirection: { x: 0, y: -1.0, z: 0 },
		keyLightIntensity: scene.zone.intensity,
		keyLightAmbientIntensity: scene.zone.ambient,
		backgroundMode: "skybox",
		skybox: {
			color: { red: 232, green: 209, blue: 235 },
			url: baseLocation + "Skyboxes/" + scene.zone.skybox + ".jpg?" + version
		},
		stage: {
			latitude: 37.777,
			longitude: 122.407,
			altitude: 0.03,
			day: 60,
			hour: 12,
			sunModelEnabled: true
		}
	});
}


function MakeMTEnds () {
	
	for (var mt = 0; mt < curves.length; mt++){
		print("creating MT end " + mt);
		MakeMTEnd(curves[mt][0], 0, true);
		MakeMTEnd(curves[mt][curves[mt].length - 1], 1, false);
	}

}

var mtEndURL = "Tubulin/tubulin.fbx?"+version;
var mtEndDimensions = {x:12, y:12, z:24};

function MakeMTEnd (segment, t, end) {

	var endOffset = 8;
	if (end) {
		endOffset = -8;
	}
    
    var pos = GetPositionOnMT(segment, t);
    var rotation = GetRotationOnMT(segment, t);
    
	//make it
	Entities.addEntity({
		type: "Model",
		name: "MT end",
		position: {x: pos.x + endOffset * rotation.tangent.x, 
                   y: pos.y + endOffset * rotation.tangent.y, 
                   z: pos.z + endOffset * rotation.tangent.z},
		rotation: rotation.rot,
		dimensions: mtEndDimensions,
		modelURL: baseLocation + mtEndURL
	});
}


function MakeMTLabels() {
    
    for (var mt = 0; mt < curves.length; mt++) {
        for (var segment = 0; segment < curves[mt].length; segment++) {
            if (segment == 0) {
                MakeMTLabel(curves[mt][segment], 0);
            }
            MakeMTLabel(curves[mt][segment], 1);
        }
    }
    
}

function MakeMTLabel(segment, t) {
    
    labelDistance = 150;
    idDimensions = {x:75, y:75, z:100};
    
    CreateIdentification("microtubule", GetPositionOnMT(segment, t), GetRotationOnMT(segment, t).rot, idDimensions, labelDistance);
    
}

function GetPositionOnMT(segment, t) {
    
    return pos = {
		x:(1-t)*(1-t)*(1-t) * (locations.cellLayout[0].x + segment[0].x) + 3*t*(1-t)*(1-t) * (locations.cellLayout[0].x + segment[1].x)
		+ 3*t*t*(1-t) * (locations.cellLayout[0].x + segment[2].x) + t*t*t * (locations.cellLayout[0].x + segment[3].x),
		y:(1-t)*(1-t)*(1-t) * (locations.cellLayout[0].y + segment[0].y) + 3*t*(1-t)*(1-t) * (locations.cellLayout[0].y + segment[1].y)
		+ 3*t*t*(1-t) * (locations.cellLayout[0].y + segment[2].y) + t*t*t * (locations.cellLayout[0].y + segment[3].y),
		z:(1-t)*(1-t)*(1-t) * (locations.cellLayout[0].z + segment[0].z) + 3*t*(1-t)*(1-t) * (locations.cellLayout[0].z + segment[1].z)
		+ 3*t*t*(1-t) * (locations.cellLayout[0].z + segment[2].z) + t*t*t * (locations.cellLayout[0].z + segment[3].z)
	}
    
}

function GetRotationOnMT(segment, t) {
    
    var dir = -1;
	if (t < 0.5) {
		dir = 1;
	}
	var tangent = Vec3.normalize({
		x:3*(1-t)*(1-t) * ((locations.cellLayout[0].x + segment[1].x) - (locations.cellLayout[0].x + segment[0].x))
		+ 6*t*(1-t) * ((locations.cellLayout[0].x + segment[2].x) - (locations.cellLayout[0].x + segment[1].x))
		+ 3*t*t * ((locations.cellLayout[0].x + segment[3].x) - (locations.cellLayout[0].x + segment[2].x)),
		y:3*(1-t)*(1-t) * ((locations.cellLayout[0].y + segment[1].y) - (locations.cellLayout[0].y + segment[0].y))
		+ 6*t*(1-t) * ((locations.cellLayout[0].y + segment[2].y) - (locations.cellLayout[0].y + segment[1].y))
		+ 3*t*t * ((locations.cellLayout[0].y + segment[3].y) - (locations.cellLayout[0].y + segment[2].y)),
		z:3*(1-t)*(1-t) * ((locations.cellLayout[0].z + segment[1].z) - (locations.cellLayout[0].z + segment[0].z))
		+ 6*t*(1-t) * ((locations.cellLayout[0].z + segment[2].z) - (locations.cellLayout[0].z + segment[1].z))
		+ 3*t*t * ((locations.cellLayout[0].z + segment[3].z) - (locations.cellLayout[0].z + segment[2].z))
	});
	var pitch = Quat.angleAxis(Math.asin(dir * -tangent.y) * 180.0 / Math.PI, {x:1, y:0, z:0});
	var yaw = Quat.angleAxis(Math.atan2(dir * tangent.x, dir * tangent.z) * 180.0 / Math.PI, {x:0, y:1, z:0});
    
    return {rot: Quat.multiply(yaw, pitch), tangent: tangent};
    
}


var curves = [
	[
        [
            {x:-495.1377539, y:447.6999851, z:67.71881918}, 
            {x:-459.8060244, y:430.0299175, z:58.61231833}, 
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[{x:83.42134712, y:200.2696054, z:1106.824032}, {x:112.6081492, y:213.9852171, z:1190.69022}, {x:137.6210702, y:226.5836209, z:1278.28982}, {x:142.4602929, y:232.6479039, z:1336.391073}]],[[{x:181.1310389, y:182.4028384, z:506.3169496}, {x:256.1469397, y:181.1159826, z:621.5966174}, {x:246.0581264, y:127.3485384, z:686.2212735}, {x:239.3139456, y:101.6389268, z:752.4468683}],
[{x:239.3139456, y:101.6389268, z:752.4468683}, {x:232.5697648, y:75.92931509, z:818.6724631}, {x:167.4629908, y:62.9449301, z:868.6595572}, {x:153.6295618, y:90.99936589, z:940.1899851}],
[{x:153.6295618, y:90.99936589, z:940.1899851}, {x:139.7961327, y:119.0538017, z:1011.720413}, {x:141.1078059, y:149.9898688, z:1046.280417}, {x:173.6899256, y:173.307857, z:1148.796377}],
[{x:173.6899256, y:173.307857, z:1148.796377}, {x:206.2720453, y:196.6258451, z:1251.312338}, {x:271.1873259, y:195.7884074, z:1266.459424}, {x:279.2307724, y:165.9507466, z:1383.43306}]]];

function assignVariables(){
	cellLayout = "Object Name,TranslateX,TranslateY,TranslateZ,DimensionX,DimensionY,DimensionZ, RotateX, RotateY, RotateZ;NPC,197.8817968,187.1750856,343.3718791,24.13382446,34.22486206,30.38697693,46.23119528,-8.353895581,8.869973765;NPC,213.3709151,2.456316462,423.9885128,25.53621185,34.58618774,24.07834717,90.38281992,-7.832244708,0;NPC,33.34912856,2.090308135,365.04642,25.53621185,34.58618774,24.07834717,90.39885078,-38.49088523,0;NPC,397.5101386,159.5911591,319.6113615,25.53621185,34.58618774,24.07834717,50.3605842,37.83254121,0;NPC,156.5827125,-122.5087526,377.9210147,25.53621185,34.58618774,24.07834717,115.9481277,-11.66518146,0;golgi,-318.7046145,66.9773569,976.6478796,211.1744971,156.6775269,204.0570996,115.0039041,-35.67118658,-77.29622127;golgi,456.0077009,0,-837.4997205,235.0718115,174.4077612,227.1489771,-25.72753579,12.39046363,101.1906405;microtubule1,212.4149854,132.4649414,944.2434082,142.5869824,122.8758984,880.6406836,0,0,0;microtubule10,673.8832031,311.0911194,-148.9548248,200.3548828,452.0626831,200.2862878,0,0,0;microtubule11,732.2112598,361.0221094,-546.264873,89.10005859,364.5919922,488.656582,0,0,0;microtubule12,739.5973828,340.5306592,-314.7477979,71.43855469,381.5696191,163.5716895,0,0,0;microtubule13,547.683501,315.5453137,-194.0386853,450.7195605,452.5557788,230.4621606,0,0,0;microtubule14,556.663916,415.2724512,-436.4479395,283.920293,207.0583008,657.0294727,0,0,0;microtubule15,660.601377,201.7332788,-572.2047363,508.4347852,224.4388916,408.4554492,0,0,0;microtubule16,506.7585205,204.8784119,-527.3789355,154.4813965,242.6824146,450.410918,0,0,0;microtubule17,212.1601877,58.27322021,-728.5755762,367.6139996,489.4616455,107.694668,0,0,0;microtubule18,398.5259912,137.8724231,-665.1991992,112.6322754,371.4562866,196.6646484,0,0,0;microtubule19,380.7953174,226.3009131,-449.3071655,81.91825195,156.3450879,654.2884424,0,0,0;microtubule2,30.6969873,141.0839227,876.8226709,232.4791699,192.0579456,920.3092676,0,0,0;microtubule20,-17.70177979,102.1328238,-793.8511963,249.8578271,254.9617255,626.1412793,0,0,0;microtubule21,77.27729828,414.6652734,-875.5563281,112.0010284,370.8857812,414.7598437,0,0,0;microtubule22,206.3877283,127.7296783,-799.063623,248.5948755,233.9102527,596.1479883,0,0,0;microtubule23,26.83012939,306.4021143,-869.8149609,151.6807324,229.8870996,438.0902344,0,0,0;microtubule24,130.2055444,10.68804199,-875.882373,102.7668896,337.1855273,478.814707,0,0,0;microtubule25,466.3101562,323.6335986,125.3250128,363.4645312,146.882959,368.3232751,0,0,0;microtubule26,486.9932666,242.030116,363.5398682,289.2078809,287.3686157,132.0589746,0,0,0;microtubule27,577.1186426,218.112627,122.2437305,136.8993164,381.0901172,311.8405664,0,0,0;microtubule28,477.9364307,294.2746069,284.5083691,329.104834,203.73854,36.79857422,0,0,0;microtubule29,602.5964648,317.1294214,80.40759521,130.0769531,205.3262549,366.1346924,0,0,0;microtubule3,-139.0224133,-173.8191055,-427.1847363,337.7971655,363.020246,759.5431055,0,0,0;microtubule30,559.5994629,-337.2936108,210.2427393,166.3097461,468.162583,203.6533301,0,0,0;microtubule31,419.9002661,-500.184126,316.3121631,407.9912256,122.8493262,84.17920898,0,0,0;microtubule32,532.1963672,-447.1643115,104.0702747,257.4648047,199.2719238,389.7403491,0,0,0;microtubule33,482.8850098,-448.0571045,311.7472119,325.9098633,212.6162988,44.34436523,0,0,0;microtubule34,621.9338965,-416.982041,118.7065613,126.4250977,271.4240039,329.2003931,0,0,0;microtubule35,-118.3220728,110.4977856,955.7098828,622.6587451,493.0616748,154.8304687,0,0,0;microtubule36,-38.73700195,295.7910132,735.6735938,813.0149414,130.0887158,432.2794922,0,0,0;microtubule37,-147.0284253,183.0389575,716.1807568,518.7239502,341.7746631,490.7852051,0,0,0;microtubule38,-505.4994727,260.7653027,570.3792847,172.7321484,194.3118164,730.0565479,0,0,0;microtubule39,-330.203606,255.0918164,658.6816846,226.97896,194.4717773,593.7860449,0,0,0;microtubule4,97.25859375,-81.19509682,-651.4826221,787.3532813,177.7109001,338.228584,0,0,0;microtubule40,-200.9843848,60.38698975,720.7139062,519.6625781,586.7271533,430.7780859,0,0,0;microtubule41,287.1684814,114.7601161,777.7985156,734.9856152,206.0788889,468.8053125,0,0,0;microtubule42,589.3171875,134.296333,583.4237842,159.3030469,180.6350391,838.2054785,0,0,0;microtubule43,445.5135352,-95.13089355,938.1663281,392.8723828,599.7641895,169.9720312,0,0,0;microtubule44,428.9714355,45.15916992,676.3465869,449.8033008,347.0653711,673.1271387,0,0,0;microtubule45,505.1379199,-83.39869629,677.9993848,336.0916992,599.8922168,643.4302148,0,0,0;microtubule46,-279.8748102,-401.6762476,540.5428711,625.014364,334.9703174,104.5120312,0,0,0;microtubule47,-522.0736963,-360.1754443,303.4938977,123.0875684,374.5616895,402.6039624,0,0,0;microtubule48,-264.077915,-531.3914502,398.5253467,593.5828418,83.4909668,304.2609082,0,0,0;microtubule49,-462.3454541,-368.403479,406.0618945,204.1284668,400.7098389,246.7103906,0,0,0;microtubule5,-235.8658887,142.852633,-458.1761499,168.1641211,281.0347536,659.5777002,0,0,0;microtubule50,-270.6177164,-552.1942676,517.5230713,567.2812079,107.8213477,107.9428418,0,0,0;microtubule51,-309.9686316,345.4123975,-270.0235071,393.3619556,196.0721777,612.4700171,0,0,0;microtubule52,-461.5955127,164.0074951,-133.1996063,94.17870117,568.1300684,386.5102991,0,0,0;microtubule53,-349.3235669,233.7860156,-66.56753998,315.557124,399.5180273,164.2730255,0,0,0;microtubule54,-363.6500024,351.6772412,320.7801343,276.5947998,201.2884863,511.4768408,0,0,0;microtubule55,-393.347124,280.0743311,102.1417091,227.8053223,299.9349316,204.8680662,0,0,0;microtubule56,-227.535769,288.7856909,-53.67977051,539.6171338,325.6723096,250.9921875,0,0,0;microtubule6,-20.18329102,-70.09014084,-483.5474414,577.0610156,153.2483414,647.0252344,0,0,0;microtubule7,15.20736328,62.57915131,-463.1074878,619.3040039,159.3178107,683.8982666,0,0,0;microtubule8,557.853501,434.7157031,14.36625,435.7967871,218.8402734,572.1272461,0,0,0;microtubule9,790.0964648,302.6857306,-46.75898437,106.6875,484.5883044,487.1542383,0,0,0;mitochondria1,509.9553464,60.67585787,598.6037478,56.38573425,55.78621948,97.22390625,18.53970718,0,0;mitochondria2,236.1862652,8.347496228,771.7170695,69.44670044,68.70831848,160.0913306,0,-58.66119162,0;mitochondria3,-237.8879342,-80.8010362,794.9918666,74.3063324,72.65880615,278.4640576,12.50616674,-13.37802957,-34.78928216;mitochondria4,-480.3502638,0,623.5202907,56.38573425,55.78621948,97.22390625,0,0,0;mitochondria5,654.307804,246.0744739,370.0455458,69.44670044,68.70831848,160.0913306,-55.07883972,0,0;mitochondria6,0,-464.9341727,0,69.44670044,68.70831848,160.0913306,-25.64558815,-58.48676953,-21.37185167;mitochondria7,0,0,-581.7224431,69.44670044,68.70831848,160.0913306,4.948279917,-70.48661547,121.4859061;mitochondria8,624.0007,49.31601383,-87.21635338,69.44670044,68.70831848,160.0913306,89.76656115,-5.023110397,-48.14947773;nucleus,208.5936936,6.113100222,153.3202277,522.7149005,515.7176939,518.1826595,0,0,0;rough_ER1,253.871543,-69.16218018,184.1513013,624.6314062,553.1499756,621.0511084,0,0,0;rough_ER2,221.76854,64.61654297,146.9922729,621.8760059,558.2816016,585.9084229,0,0,0;smoothER,-132.954492,-89.25859014,80.62120204,376.5313623,386.0319287,318.3009668,122.954661,-71.58529221,-50.75833529;smoothER,-139.2748633,-37.55435675,275.4559992,350.3096777,359.3174121,299.3762402,-12.50517141,-27.97002065,5.954923214;smoothER,243.6573639,10.98815226,-278.1663356,402.7864746,412.9494434,340.4957227,0,0,0;";
}

for (var i = 0; i < scenes.length; i++) {
	//deleteAllInRadius(scenes[i].location, scenes[i].zone.dimensions.x);
	ImportScene(scenes[i]);
	CreateNavigationButton(scenes[i], i);
}

//Entities.addEntity({
//	type: "Box",
//	name: "motorProteinController",
//	position: {x:4000, y:4000, z:4000},
//	color: {red: 200, green: 0, blue: 0},
//	script: baseLocation + "Scripts/motorProteinController.js?"+version,
//	visible: false
//});

Entities.addEntity({
	type: "Light",
	name: "Cell layout light",
	position: {x:locations.cellLayout[0]+ 110,y:locations.cellLayout[0]+ 160,z:locations.cellLayout[0]+ 785},
	dimensions:{x:1500,y:1500,z:1500},
	intensity: 2,
	color: {red:240, green: 165, blue: 240}
})